RNA-Seq and cDNA-Microarray data sets

An RNA-Seq data set (download) studying the human transcriptome through the expression levels of 41208 (after normalization) protein coding and non protein coding Ensembl-annotated genes, measured across 18 samples of different somatic tissues [1]. A matlab script (download) with execution instructions.

A microarray data set (download) studying the longitudinal transcriptional profile of blood cells within a week of IFN-β administration to multiple sclerosis patients [2]. The dataset consists of 9111 genes whose levels of expression were measured across 4 different individuals through 28 time points. A matlab script (download) with execution instructions.

[1]: Brawand D, et. al. “The evolution of gene expression levels inmammalian organs”,  Nature. 2011 Oct 19;478(7369):343-8

[2]: Fernald GH, et al. “Genome-wide network analysis reveals the global properties of IFN-beta immediate transcriptional effects in humans”, J Immunol. 2007 Apr 15;178(8):5076-85.